Immunomedicine Group: Tools >> Modelling and 3D-Structure Analysis
     
Version en castellano
Tools
 
  Alignment Analysis
  Databases
  Computational Immunology
  Modelling & 3D-structure     Analysis
  Sequence Manipulation &     Analysis
  Similarity Searches
  View all Tools
 
 Tools    >> Modelling and 3D-Structure Analysis
  ENDscript: Analyse and generate multiple output from a PDB
An interface grouping seven programs: BLAST; MULTALIN/ CLUSTALW; DSSP; CNS; ESPript; BOBSCRIPT/ MOLSCRIPT; PHYLODENDRON. Aims to produce from a single PDB file, three PostScript figures containing most required sequence and structure information on a protein. Just upload your PDB and hit the RUN button.
  H2PDB
Map Sequence variability (H) onto a 3D structure. This server maps amino acid sequence variability onto 3D structures.
  Modeling and Solvent Accessibility Tool
Identifying solvent exposed hydrophobic residues from within a protein sequence, and compares them with those of closely related sequences, making it possible to select the optimal residues to target for site-directed mutagenesis.
  PVS
A server which calculates the variability from multiple sequence alignment using the Shannon entropy (H) function, the Simpson entropy function and the Wu-Kabat entropy function.

Contact Us    |   Immunomedicine Group    |