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   Scientific Publications
 Scientific Publications 

Garcia-Boronat M, Diez-Rivero CM, Reinherz EL, Reche PA

PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery

Nucleic Acids Res. 2008 Jul 1; 36 (Web Server issue):W35-41.Epub 2008 Apr 27Abstract

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Reche PA,Reinherz EL

Prediction of peptide-MHC binding using profiles

Methods Mol Biol. 2007; 409:185-200Abstract

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Reche PA,Reinherz EL

Definition of MHC supertypes through clustering of MHC peptide-binding repertoires

Methods Mol Biol. 2007; 409:163-73Abstract

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Reche PA,Keskin DB, Hussey RE, Ancuta P,Gabuzda D,Reinherz EL

Elicitaion from virus-naive individuals of cytotoxic T lymphocytes directed against conserved HIV-1 epitopes

Med Immunol. 2006 May 18;5:1Abstract

Download file (Reche_MI_2006.pdf)



Manoj Bhasin, Ellis L. Reinherz and Pedro A. Reche.

Recognition and classification of histones using support vector machine.

J Comput Biol. 2006 Jan-Feb;13(1):102-12.Abstract

Download file (Bhasin_etal_CMV.pdf)



Manoj Bhasin, Hong Zhang, Ellis L. Reinherz and Pedro A. Reche.

Prediction of methylated CpGs in DNA sequences using a support vector machine.

FEBS Lett. 2005 Jul 25; [Epub ahead of print]Abstract

Download file (Bhasin_etal_FEBS_2005.pdf)



Reche PA, Reinherz EL.

PEPVAC: a web server for multi-epitope vaccine development based on the prediction of supertypic MHC ligands.

Nucleic Acids Res. 2005 Jul 1;33:W138-42.Abstract

Download file (Reche_Reinherz_NAR_2005.pdf)



Yang H, Kim SK, Kim M, Reche PA, Morehead TJ, Damon IK, Welsh RM, Reinherz EL.

Antiviral chemotherapy facilitates control of poxvirus infections through inhibition of cellular signal transduction.

J Clin Invest. 2005 Feb;115(2):379-87.Abstract

Download file (Yang_etal_JCI_2005.pdf)



Reche PA, Zhang H, Glutting JP, Reinherz EL.

EPIMHC: a curated database of MHC-binding peptides for customized computational vaccinology

Bioinformatics. 2005 May 1;21(9):2140-1 Abstract

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Reche PA, Reinherz EL.

Definition of MHC supertypes through clustering of MHC peptide binding repertoires

Artificial Immune Systems. Procedings of Third international conference, ICARIS. 2004. LNCS 3239, pp. 189-196.Eds. G. Nicosia, V. Cutello, P. J. Bentley and T. Timmis. Springer-Verlag Berling Heidelberg. Abstract

Download file (Reche_Reinherz_ICARIS_2004.pdf)



Reche PA, Glutting JP, Zhang H, Reinherz EL.

Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles.

Immunogenetics. 2004 Sep;56(6):405-19. Epub 2004 Sep 03. Abstract

Download file (Reche_etal_Immunog_2004.pdf)



Fridkis-Hareli M, Reche PA, Reinherz EL.

Peptide variants of viral CTL epitopes mediate positive selection and emigration of Ag-specific thymocytes in vivo.

J Immunol. 2004 Jul 15;173(2):1140-50. Abstract

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Kim M, Yang H, Kim SK, Reche PA, Tirabassi RS, Hussey RE, Chishti Y, Rheinwald JG, Morehead TJ, Zech T, Damon IK, Welsh RM, Reinherz EL.

Biochemical and functional analysis of smallpox growth factor (SPGF) and anti-SPGF monoclonal antibodies.

J Biol Chem. 2004 Jun 11;279(24):25838-48. Epub 2004 Apr 07. Abstract

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Zhong W, Reche PA, Lai CC, Reinhold B, Reinherz EL.

Genome-wide characterization of a viral cytotoxic T lymphocyte epitope repertoire.

J. Biol Chem. 2003 Nov 14; 278(46): 45135-44. Epub 2003 Sep 05. Abstract

Download file (Weimin_Reche_JBC.pdf)



Reche PA and Reinherz EL.

Sequence variability analysis of human class I and class II MHC molecules: functional and structural correlates of amino acid polymorphisms.

J Mol Biol. 2003 Aug 15; 331(3): 623-41. Abstract

Download file (Reche_Reinherz_JMB_2003.pdf)



Reche PA, Glutting JP and Reinherz EL.

Prediction of MHC Class I Binding Peptides Using Profile Motifs

Human Immunology 63, 701 709 (2002) Abstract

Key words: PSSM; profile; epitopes; MHC; prediction

Download file (Reche_Glutting_HumImmunol.pdf)



Fiorini E, Schmitz I, Marissen WE, Osborn SL, Touma M, Sasada T, Reche PA, Tibaldi EV, Hussey RE, Kruisbeek AM, Reinherz EL, Clayton LK.

Peptide-induced negative selection of thymocytes activates transcription of an NF-kappa B inhibitor.

Mol Cell. 2002 Mar;9(3):637-48. Abstract

Download file (Fiorini_SchmitzMC.pdf)



Moody AM, Chui D, Reche PA, Priatel JJ, Marth JD, Reinherz EL

Developmentally regulated glycosylation of the CD8alphabeta coreceptor stalk modulates ligand binding.

Cell. 2001 Nov 16;107(4):501-12. Abstract

Download file (Moody_Chui_Cell.pdf)


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