prettyplot

 Open help window for prettyplot

(Displays aligned sequences, with colouring and boxing)
Fields with a coloured background are optional and can safely be ignored...
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1. Set the parameters for the run (or accept the defaults...)
input section
Select a set of sequences.

Use one of the following three fields:  

  1. To access a sequence from a database, enter the USA path here: (dbname:entry)

  2. Or, upload a sequence file from your local computer here:

  3. Or enter the sequence data manually here:
Matrix file  
  or select a matrix file to upload here:  
  (file must contain an integer scoring matrix)
additional section
Number of residues to be displayed on each line   (integer)    
Residues before a space   (integer)     (default is same as -residuesperline to give no breaks)
Colour residues by their consensus value.?  
Colour to display identical residues (RED)  
 
Colour to display similar residues (GREEN)  
 
Colour to display other residues (BLACK)  
 
Colour residues by table oily, amide etc.?  
Shading  
 
2. Submit to prettyplot...
If you are submitting a long job and would like to be informed by email when it finishes,
please enter your email address in the space below