cons

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(Creates a consensus from multiple alignments)
Fields with a coloured background are optional and can safely be ignored...
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1. Set the parameters for the run (or accept the defaults...)
input section
File containing a sequence alignment..

Use one of the following three fields:  

  1. To access a sequence from a database, enter the USA path here: (dbname:entry)

  2. Or, upload a sequence file from your local computer here:

  3. Or enter the sequence data manually here:
Scoring matrix  
  or select a matrix file to upload here:  
  (file must contain an integer scoring matrix)
additional section
Plurality check value   (real number)     (default is half the total sequence weighting)
Required number of identities at a position   (integer)    
Define a threshold above which the consensus is given in uppercase   (real number)    
output section
Output file format:
Name of the consensus sequence  
 
2. Submit to cons...
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