compseq

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(Count composition of dimer/trimer/etc words in a sequence)
Fields with a coloured background are optional and can safely be ignored...
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1. Set the parameters for the run (or accept the defaults...)
input section
Select a set of sequences.

Use one of the following three fields:  

  1. To access a sequence from a database, enter the USA path here: (dbname:entry)

  2. Or, upload a sequence file from your local computer here:

  3. Or enter the sequence data manually here:
Program compseq output file (optional)  
 
required section
Word size to consider (e.g. 2=dimer)   (integer)    
additional section
Frame of word to look at (0=all frames)   (integer)    
Ignore the amino acids B and Z and just count them as 'Other'?  
Count words in the forward and reverse sense?  
Calculate expected frequency from sequence?  
output section
Program compseq output file  
Display the words that have a frequency of zero?  
2. Submit to compseq...
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