trimseq

 Open help window for trimseq

(Trim ambiguous bits off the ends of sequences)
Fields with a coloured background are optional and can safely be ignored...
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1. Set the parameters for the run (or accept the defaults...)
input section
Select a set of sequences.

Use one of the following three fields:  

  1. To access a sequence from a database, enter the USA path here: (dbname:entry)

  2. Or, upload a sequence file from your local computer here:

  3. Or enter the sequence data manually here:
additional section
Window size   (integer)    
Percent threshold of ambiguity in window   (real number)    
Trim off all ambiguity codes, not just N or X?  
Trim off asterisks?  
advanced section
Trim at the start?  
Trim at the end?  
output section
Output file format:
2. Submit to trimseq...
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