supermatcher

 Open help window for supermatcher

(Match large sequences against one or more other sequences)
Fields with a coloured background are optional and can safely be ignored...
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1. Set the parameters for the run (or accept the defaults...)
input section
Select a set of sequences.

Use one of the following three fields:  

  1. To access a sequence from a database, enter the USA path here: (dbname:entry)

  2. Or, upload a sequence file from your local computer here:

  3. Or enter the sequence data manually here:
Select a set of sequences.

Use one of the following three fields:  

  1. To access a sequence from a database, enter the USA path here: (dbname:entry)

  2. Or, upload a sequence file from your local computer here:

  3. Or enter the sequence data manually here:
Matrix file  
  or select a matrix file to upload here:  
  (file must contain a floating point scoring matrix)
required section
Gap opening penalty   (real number)     (default is 10.0 for any sequence type)
Gap extension penalty   (real number)     (default is 0.5 for any sequence type)
additional section
Alignment width   (integer)    
Word length for initial matching   (integer)    
output section
Alignment format:
Program supermatcher errors output file  
2. Submit to supermatcher...
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