stretcher

Open help window for stretcher

(Finds the best global alignment between two sequences)

Fields with a coloured background are optional and can safely be ignored...
[ Hide optional fields ]
1. Set the parameters for the run (or accept the defaults...)
input section
Select an input sequence.

Use one of the following three fields:  

  1. To access a sequence from a database, enter the USA path here: (dbname:entry)

  2. Or, upload a sequence file from your local computer here:

  3. Or enter the sequence data manually here:


Select an input sequence.

Use one of the following three fields:  

  1. To access a sequence from a database, enter the USA path here: (dbname:entry)

  2. Or, upload a sequence file from your local computer here:

  3. Or enter the sequence data manually here:


Matrix file  
  or select a matrix file to upload here:  
  (file must contain an integer scoring matrix)
additional section
Gap penalty   (Positive integer)     (default is 12 for protein, 16 for nucleic)
Gap length penalty   (Positive integer)     (default is 2 for protein, 4 for nucleic)
output section
Alignment format:
2. Submit to stretcher...
If you are submitting a long job and would like to be informed by email when it finishes,
please enter your email address in the space below