Open help window for remap

(Display sequence with restriction sites, translation etc.)

Fields with a coloured background are optional and can safely be ignored...
[ Hide optional fields ]
1. Set the parameters for the run (or accept the defaults...)
input section
Select a set of sequences.

Use one of the following three fields:   (file must contain DNA sequences)

  1. To access a sequence from a database, enter the USA path here: (dbname:entry)

  2. Or, upload a sequence file from your local computer here:

  3. Or enter the sequence data manually here:

required section
Comma separated enzyme list  
Minimum recognition site length   (integer)    
additional section
Minimum cuts per RE   (integer)    
Maximum cuts per RE   (integer)    
Force single site only cuts?  
Allow blunt end cutters?  
Allow sticky end cutters?  
Allow ambiguous matches?  
Allow circular DNA?  
Only enzymes with suppliers?  
Genetic code to use
Frame(s) to translate
output section
Output file name  
List the enzymes that cut?  
Display RE sites in flat format?  
Limits reports to one isoschizomer?  
Display translation?  
Display cut sites and translation of reverse sense?  
Minimum size of ORFs   (integer)     (If this value is left as 0 then all of the translation is shown.)
Regions to put in uppercase (eg: 4-57,78-94)  
  (If this is left blank, then the sequence case is left alone.)
Regions to colour in HTML (eg: 4-57 red 78-94 green)  
Display protein sequences in three-letter code?  
Number the sequences?  
Width of sequence to display   (integer)    
Line length of page (0 for indefinite)   (integer)    
Margin around sequence for numbering   (integer)    
Display sequence ID?  
Display description?  
Offset to start numbering the sequence from   (integer)    
Use HTML formatting?  
2. Submit to remap...
If you are submitting a long job and would like to be informed by email when it finishes,
please enter your email address in the space below