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(Creates matrices/profiles from multiple alignments)

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1. Set the parameters for the run (or accept the defaults...)
input section
Select a set of sequences.

Use one of the following three fields:  

  1. To access a sequence from a database, enter the USA path here: (dbname:entry)

  2. Or, upload a sequence file from your local computer here:

  3. Or enter the sequence data manually here:

Select type
Scoring matrix  
  or select a matrix file to upload here:  
  (file must contain a floating point scoring matrix)
required section
Enter a name for the profile  
profiletypesection section
Enter threshold reporting percentage   (integer)    
gapsection section
Gap opening penalty   (real number)    
Gap extension penalty   (real number)    
output section
Output file name  
2. Submit to prophecy...
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