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(Creates a distance matrix from multiple alignments)

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1. Set the parameters for the run (or accept the defaults...)
input section
File containing a sequence alignment..

Use one of the following three fields:  

  1. To access a sequence from a database, enter the USA path here: (dbname:entry)

  2. Or, upload a sequence file from your local computer here:

  3. Or enter the sequence data manually here:

required section
Method to use
Method to use
additional section
Use the ambiguous codes in the calculation.?  
Weight given to gaps   (real number)    
Base position to analyse   (integer)    
Calculate the nucleotide Jin-Nei parameter 'a'?  
Nucleotide Jin-Nei parameter 'a'   (real number)    
output section
Phylip distance matrix output file  
2. Submit to distmat...
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