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(Plot CpG rich areas)

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1. Set the parameters for the run (or accept the defaults...)
input section
Select a set of sequences.

Use one of the following three fields:   (file must contain DNA sequences)

  1. To access a sequence from a database, enter the USA path here: (dbname:entry)

  2. Or, upload a sequence file from your local computer here:

  3. Or enter the sequence data manually here:

required section
Window size   (integer)    
Minimum length of an island   (integer)    
Minimum observed/expected   (real number)    
Minimum percentage   (real number)    
output section
This sets the name of the file holding the report of the input sequence name, CpG island parameters and the output details of any CpG islands that are found.  
unknown datatype 'toggle'
Output graphic format  
Show observed/expected threshold line?  
Show CpG rich regions?  
Show percentage line?  
Feature output format:
Separate files for each entry?  
2. Submit to cpgplot...
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