SIAS
This server calculates identities and similarities between two sequences
INPUT
Paste your alignment (CLUSTAL, FASTA or GCG/PileUp format)
or Upload a file with the alignment in CLUSTAL, FASTA or GCG/PileUp format
IDENTITY METHOD
-
Gaps are not taken into account:
-
Gaps are taken into account:
AMINO ACID SIMILARITY
Choose your amino acid groups:
Aromatic:
F
Y
W
H
Hidrophobic:
V
I
L
M
C
A
F
Y
W
H
R
G
K
Aliphatic:
V
I
L
Charged positive:
R
K
H
Charged negative:
D
E
Polar:
N
Q
H
K
R
D
E
T
S
Small:
A
T
S
C
G
N
D
P
V
GLOBAL SIMILARITY
Select a matrix:
BLOSUM62
PAM250
GONNET
Select gap penalties:
Cost for creating the gap (0-100)
Cost for extending the gap (0-100)
Credits & Complaints: Pedro Reche
Hits since April/2008:
Last updated:
