PSSM derived from an alignment of H2-Kb 8-mers using PROFILEWEIGHT:
Cons A C D E F G H I K L M N P Q R S T V W Y Gap Len ..
S 6 -1 0 2 0 -1 -1 5 2 3 5 2 -2 3 1 6 5 6 -6 0 100 100
S 5 1 0 1 1 1 1 4 1 3 4 3 -1 2 -1 6 5 5 -4 2 100 100
Y -2 -7 -8 -5 8 -11 1 4 -5 2 3 -7 -4 -2 -7 -3 -2 4 0 16 100 100
I 1 -4 4 6 -1 -3 2 2 4 0 3 5 -1 4 2 4 3 2 -6 0 100 100
F -14 -17 -26 -23 50 -24 3 1 -23 1 1 -21 -31 -19 -23 -14 -13 -5 14 45 100 100
T 6 0 1 4 -1 -1 1 1 4 2 3 4 1 5 4 6 7 3 -5 0 100 100
K 4 -2 2 4 -2 1 4 -2 6 -1 2 6 0 6 6 6 6 0 -3 1 100 100
L 0 -2 -29 -20 4 -29 -22 25 -14 31 23 -22 -21 -13 -15 -11 -1 22 -16 -4 100 100
* 29 9 14 19 54 21 7 56 20 59 13 29 16 15 23 33 34 36 3 54
Only the columns headed with
standart amino acids are considered. Additional lines or columns are skiped
by RANKPEP