SUMMARY
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Variables
  • Variability Threshold: 1
  • Base sequence: Consensus
VARIABILITY PLOT

Shannon    Simpson    Wu-Kabat    


VARIABILITY MASKED SEQUENCE

Fasta sequence:

>201233222008_3d2aln
L.NVTE.FNMWKN.MVEQMH.DIISLWDQSLKPCVKLTPLCVTL.CCNTS.ITQACPKVSF.PIPIHYCA
PAG.AILKC....FNGTGPC.NVSTVQCTHGIKPVVSTQLLLNGSLAE...IRSEN.T.N.K.IIVQL..
.V.I.C.RP..C......W..TL..V...L...F....I.F...SGGD.EI..H.FNC.GEFFYCNT..L
FN..........I.L.CRIKQIINMWQ.VG.AMYAPPI.G.I.C.SNITGLLLTRDGG......E.FRPG
GG.MRDNWRSELYKYKVV.I.

Variable positions are masked with "." symbols.


CONSERVED FRAGMENTS WITH NO VARIABLE RESIDUES

Fragments of 8 or more consecutive residues with V <= 1
NStartEndSequence
1 22 44 D I I S L W D Q S L K P C V K L T P L C V T L
2 52 61 I T Q A C P K V S F
3 63 73 P I P I H Y C A P A G
4 93 119 N V S T V Q C T H G I K P V V S T Q L L L N G S L A E
5 202 209 G E F F Y C N T
6 232 242 C R I K Q I I N M W Q
7 261 273 S N I T G L L L T R D G G
8 289 303 M R D N W R S E L Y K Y K V V


MAP VARIABILITY ONTO 3D STRUCTURE


Click on the conserved fragments to locate them in your pdb file


1RZKG

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Variability Mapping



Blue is conserved and Red is variable

PDB Data

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Variability Data

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